PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505161.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 143aa MW: 15786 Da PI: 8.8069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.2e-05	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + +++L++A+eYI L XP_004505161.1 33 KDRKEKLGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 72 667788889999999999999.....9***************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.40E-6	22	77	No hit	No description
PROSITE profile	PS50888	10.563	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	30	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-11	33	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MMGHKRSPCS VDQSSYNSIA SKKQKPDLEI TTKDRKEKLG ERIVALQQLV SPYGKTDTSS 60 VLKEAMEYIG FLHKQVKLLS APYLETSPAT EMQGTESCSL RSRGLCLVPV SFTIGVAEGN 120 GADIWAPIKT NSPKYEKDVS QFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092520	1e-134	BT092520.1 Soybean clone JCVI-FLGm-11K11 unknown mRNA.
GenBank	KT031098	1e-134	KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505158.1	1e-103	PREDICTED: transcription factor bHLH113 isoform X1
Refseq	XP_004505161.1	1e-104	PREDICTED: transcription factor bHLH113 isoform X3
Swissprot	Q9LT67	5e-32	BH113_ARATH; Transcription factor bHLH113
TrEMBL	G7JNL3	2e-94	G7JNL3_MEDTR; BHLH transcription factor-like protein
STRING	GLYMA07G32980.1	1e-87	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	4e-54	bHLH family protein