PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505161.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 143aa    MW: 15786 Da    PI: 8.8069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.2e-0533721054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R +++ +++  L++l+ +      +K + +++L++A+eYI  L
  XP_004505161.1 33 KDRKEKLGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 72
                    667788889999999999999.....9***************887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.40E-62277No hitNo description
PROSITE profilePS5088810.5632372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-83090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-113388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMGHKRSPCS VDQSSYNSIA SKKQKPDLEI TTKDRKEKLG ERIVALQQLV SPYGKTDTSS  60
VLKEAMEYIG FLHKQVKLLS APYLETSPAT EMQGTESCSL RSRGLCLVPV SFTIGVAEGN  120
GADIWAPIKT NSPKYEKDVS QFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925201e-134BT092520.1 Soybean clone JCVI-FLGm-11K11 unknown mRNA.
GenBankKT0310981e-134KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505158.11e-103PREDICTED: transcription factor bHLH113 isoform X1
RefseqXP_004505161.11e-104PREDICTED: transcription factor bHLH113 isoform X3
SwissprotQ9LT675e-32BH113_ARATH; Transcription factor bHLH113
TrEMBLG7JNL32e-94G7JNL3_MEDTR; BHLH transcription factor-like protein
STRINGGLYMA07G32980.11e-87(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-54bHLH family protein